Does this not bring up any hacks that are not compatible with FT?
Nope. HCDU will only tell you if your mods are conflicting with one another, it won't tell you if any is outdated or not working anymore for the lastest ep you have install.
You need to check on the site where you originally got the mods and objects to see if they were in need of updates for FT. If no mention or if you are using old mods from modders that have retired (like Squinge, Monique or Christianlov for example), the safest thing to do is to remove the mod(s). Some objects were also in need of updates to have all the new FT menu options appear correctly.
Nothing wrong with the conflicting I am seeing as long as you do use the latest Inteen version, a new one was made to be FT compatible.