I'm using Delphy's Download Organiser and well...

[SangsBleus]

I looked over the tutorials at mts2 and whatnot, but I'm still wondering whether or not I can delete *Empty packages* and *duplicates*. Help, please?! I'm attempting to organize my downloads folder.  >.>

[Tenshii~Akari]

Considering that we don't host/support that particular program here on this site, your best bet is to ask over at the site you downloaded the Organiser from and ask in the comments section.  I'm sure you'll get a better answer there. 

[Supernatural_Vixen]

Yes, you'll have to have it scan for duplicates and then you'll be able to open just the duplicates to delete them.  I think that there is something similar for empty packages as well.

[caffeinated.joy]

As Tenshii mentioned, it would be best to ask this over on the site you got the download from. They'll be able to give you better answers